f7bb71a03a1a272a7c3d0963adaffed81244a6f9,cnvlib/export.py,,export_theta,#Any#Any#,393

Before Change

    if normal_cn:
        normal_cn = normal_cn.autosomes(also=xy_names)

    table = tumor_segs.data.loc[:, ["start", "end"]]

    // Convert chromosome names to 1-based integer indices
    chr2idx = {c: i+1
               for i, c in enumerate(tumor_segs.chromosome.drop_duplicates())}

After Change

    if normal_cn:
        normal_cn = normal_cn.autosomes(also=xy_names)

    table = tumor_segs.data.reindex(columns=["start", "end"])

    // Convert chromosome names to 1-based integer indices
    chr2idx = {c: i+1
               for i, c in enumerate(tumor_segs.chromosome.drop_duplicates())}

Instances