9b4577797edc8951dee6916e0c7f4e4def38740d,doc/examples/scripts/sequence/plasmid_map.py,,,#,20

Before Change

//annot_seq = gb.get_annotated_sequence(file)

response = requests.get(PLASMID_URL)
with open("test.gb", "w") as file:
    file.write(response.text)
file = gb.GenBankFile()
file.read("test.gb")
annotation = gb.get_annotation(file, include_only=[
    "promoter", "terminator", "protein_bind", "RBS", "CDS", "rep_origin"

After Change

response = requests.get(PLASMID_URL)
file = gb.GenBankFile()
file.read(io.StringIO(response.text))
annotation = gb.get_annotation(file, include_only=[
    "promoter", "terminator", "protein_bind", "RBS", "CDS", "rep_origin", "primer_bind"
])

Instances