98b1fe8f5c1acccb31c10028bccaa797470279d2,bin/basenji_map.py,,main,#,47

Before Change

  // set target indexes
  if options.target_indexes is not None:
    options.target_indexes = [int(ti) for ti in options.target_indexes.split(",")]
    target_subset = options.target_indexes
  else:
    options.target_indexes = list(range(job["num_targets"]))

After Change

  parser.add_option("-b", dest="bigwig",
      default=False, action="store_true",
      help="Write BigWig tracks [Default: %default]")
  parser.add_option("-c", dest="center",
      default=False, action="store_true",
      help="Compute gradients to the center position, \
            rather than the sum across sequence [Default: %default]")
  parser.add_option("-g", dest="genome_file",
      default="%s/data/human.hg38.genome" % os.environ["BASENJIDIR"],
      help="Chromosome lengths file [Default: %default]")
  parser.add_option("-l", dest="gene_list",

Instances