59345529cf7663dc4e2b491c483ca47dd50567a4,foreman/data_refinery_foreman/foreman/management/commands/create_compendia.py,Command,handle,#Command#,69

Before Change

        // default algorithm to arpack until we decide that ranomized is preferred
        svd_algorithm = "NONE" if quant_sf_only else "ARPACK"
        if options["svd_algorithm"] in ["ARPACK", "RANDOMIZED", "NONE"]:
            svd_algorithm = options["svd_algorithm"]

        logger.debug("Generating compendia for organisms", organisms=all_organisms)

        job_pipeline = ProcessorPipeline.CREATE_QUANTPENDIA if quant_sf_only else ProcessorPipeline.CREATE_COMPENDIA

After Change

        
        svd_algorithm = "ARPACK" // default algorithm to arpack until we decide that ranomized is preferred
        svd_algorithm_choices = ["ARPACK", "RANDOMIZED", "NONE"]
        if options["svd_algorithm"] and options["svd_algorithm"] not in svd_algorithm_choices:
            raise Exception("Invalid svd_algorithm option provided. Possible values are " + str(svd_algorithm_choices))
        else:
            svd_algorithm = options["svd_algorithm"]

        // only include organisms with QN targets. We"ll merge groups later.
        all_organisms = Organism.objects.all().filter(qn_target__isnull=False)
        if options["organisms"] is None:
            all_organisms = all_organisms.exclude(name__in=["HOMO_SAPIENS", "MUS_MUSCULUS"])
        else:

Instances