02bb4ed03e72ddf68e6d1aa986f428baf0afe014,cellprofiler/modules/measuretexture.py,MeasureTexture,run_one,#MeasureTexture#Any#Any#Any#Any#,491

Before Change

        props = skimage.measure.regionprops(labels, pixel_data)
        per_label = [self.run_mahotas(prop, scale, n_directions) for prop in props]
        features = dask.compute(per_label, scheduler="threads")
        features = numpy.array(features)[0].transpose(1,2,0)

        for direction, direction_features in enumerate(features):
            for feature_name, feature in zip(F_HARALICK, direction_features):
                statistics += self.record_measurement(

After Change

        features = numpy.empty((n_directions, 13, len(unique_labels)))

        for index, prop in enumerate(props):
            label_data = prop["intensity_image"]
            try:
                features[:, :, index] = mahotas.features.haralick(
                    label_data, distance=scale, ignore_zeros=True
                )
            except ValueError:
                features[:, :, index] = numpy.nan

        for direction, direction_features in enumerate(features):
            for feature_name, feature in zip(F_HARALICK, direction_features):
                statistics += self.record_measurement(
                    image=image_name,

Instances