7ca79b945accfbf1c5e435eac1e9e25c0d808272,prody/proteins/blastpdb.py,,blastPDB,#Any#Any#,13

Before Change

    if kwargs:
        LOGGER.warn("Keyword argument(s) {0} are not used."
                    .format(", ".join([repr(key) for key in kwargs])))

    try:
        import urllib.parse

After Change

        sequence = ("ASFPVEILPFLYLGCAKDSTNLDVLEEFGIKYILNVTPNLPNLFENAGEFKYKQIPI"
                    "SDHWSQNLSQFFPEAISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMN"
                    "DAYDIVKMKKSNISPNFNFMGQLLDFERTL")
    elif isinstance(sequence, Atomic):
        sequence = sequence.select("calpha and chain %s" % chain).getSequence()
    elif isinstance(sequence, Sequence):
        sequence = str(sequence)
    elif isinstance(sequence, str):
        if len(sequence) == 4 or len(sequence) == 5:
            ag = parsePDB(sequence)
            sequence = ag.select("calpha and chain %s" % chain).getSequence()

Instances