378f02bf9cd59fa2609ce3339be5885599ae1fac,mvpa/base/__init__.py,,,#,128

Before Change

    warnings_bt = False

if environ.has_key("MVPA_WARNINGS_COUNT"):
    warnings_maxcount = int(environ["MVPA_WARNINGS_COUNT"])
else:
    warnings_maxcount = 1

warning = WarningLog(
    handlers={
        False: environ.get("MVPA_WARNING_OUTPUT", "stdout").split(","),
        True: []}[environ.has_key("MVPA_NO_WARNINGS")],
    btlevels=warnings_btlevels,
    btdefault=warnings_bt,
    maxcount=warnings_maxcount
    )


if __debug__:
    from mvpa.base.verbosity import DebugLogger
    // NOTE: all calls to debug must be preconditioned with
    // if __debug__:

    debug = __Singleton("debug", DebugLogger(
        handlers=environ.get("MVPA_DEBUG_OUTPUT", "stdout").split(",")))

    // set some debugging matricses to report
    // debug.registerMetric("vmem")

    // List agreed sets for debug
    debug.register("DBG",  "Debug output itself")
    debug.register("INIT", "Just sequence of inits")
    debug.register("RANDOM", "Random number generation")
    debug.register("EXT",  "External dependencies")
    debug.register("TEST", "Debug unittests")
    debug.register("MODULE_IN_REPR", "Include module path in __repr__")
    debug.register("ID_IN_REPR", "Include id in __repr__")

    debug.register("DG",   "Data generators")
    debug.register("LAZY", "Miscelaneous "lazy" evaluations")
    debug.register("LOOP", "Support"s loop construct")
    debug.register("PLR",  "PLR call")
    debug.register("SLC",  "Searchlight call")
    debug.register("SA",   "Sensitivity analyzers call")
    debug.register("PSA",  "Perturbation analyzer call")
    debug.register("RFEC", "Recursive Feature Elimination call")
    debug.register("RFEC_", "Recursive Feature Elimination call (verbose)")
    debug.register("IFSC", "Incremental Feature Search call")
    debug.register("DS",   "*Dataset")
    debug.register("DS_",  "*Dataset (verbose)")
    debug.register("DS_ID",   "ID Datasets")
    debug.register("DS_STATS","Datasets statistics")
    // CHECKs
    debug.register("CHECK_DS_SORTED", "Checking in datasets for sorted")
    debug.register("CHECK_IDS_SORTED",
                   "Checking for ids being sorted in mappers")
    debug.register("CHECK_RETRAIN", "Checking in retraining/retesting")

    debug.register("COL",  "Generic Collectable debugging")

    debug.register("MAP",   "*Mapper")
    debug.register("MAP_",  "*Mapper (verbose)")

    debug.register("ST",   "State")
    debug.register("STV",  "State Variable")
    debug.register("COLR", "Collector for states and classifier parameters")

    debug.register("CLF",    "Base Classifiers")
    debug.register("CLF_",   "Base Classifiers (verbose)")
    debug.register("CLF_TB",
        "Report traceback in train/predict. Helps to resolve WTF calls it")
    debug.register("CLFBST", "BoostClassifier")
    debug.register("CLFBST_TB", "BoostClassifier traceback")
    debug.register("CLFBIN", "BinaryClassifier")
    debug.register("CLFMC",  "MulticlassClassifier")
    debug.register("CLFSPL", "SplitClassifier")
    debug.register("CLFFS",  "FeatureSelectionClassifier")
    debug.register("CLFFS_", "FeatureSelectionClassifier (verbose)")

    debug.register("FS",     "FeatureSelections")
    debug.register("FS_",    "FeatureSelections (verbose)")
    debug.register("FSPL",   "FeatureSelectionPipeline")

    debug.register("SVM",    "SVM")
    debug.register("SVM_",   "SVM (verbose)")
    debug.register("LIBSVM", "Internal libsvm output")

    debug.register("SMLR",    "SMLR")
    debug.register("SMLR_",   "SMLR verbose")

    debug.register("GPR",     "GPR")
    debug.register("KERNEL",  "Kernels module")

    debug.register("SG",  "PyMVPA SG wrapping")
    debug.register("SG_", "PyMVPA SG wrapping verbose")
    debug.register("SG__", "PyMVPA SG wrapping debug")
    debug.register("SG_SVM", "Internal shogun debug output for SVM itself")
    debug.register("SG_FEATURES", "Internal shogun debug output for features")
    debug.register("SG_LABELS", "Internal shogun debug output for labels")
    debug.register("SG_KERNELS", "Internal shogun debug output for kernels")
    debug.register("SG_PROGRESS",
                   "Internal shogun progress bar during computation")

    debug.register("IOH",  "IO Helpers")
    debug.register("CM",   "Confusion matrix computation")
    debug.register("CROSSC","Cross-validation call")
    debug.register("CERR", "Various ClassifierErrors")

    // Lets check if environment can tell us smth
    if environ.has_key("MVPA_DEBUG"):
        debug.setActiveFromString(environ["MVPA_DEBUG"])

    // Lets check if environment can tell us smth
    if environ.has_key("MVPA_DEBUG_METRICS"):
        debug.registerMetric(environ["MVPA_DEBUG_METRICS"].split(","))


import externals

After Change

warning = WarningLog(
    handlers={
        False: cfg.get("warnings", "output", default="stdout").split(","),
        True: []}[cfg.getboolean("warnings", "suppress", default="no")],
    btlevels=warnings_btlevels,
    btdefault=warnings_bt,
    maxcount=warnings_maxcount

Instances