91701dae31f22bbea9e6d6ab9c4d84a1cf7b23be,skbio/io/format/stockholm.py,,_tabular_msa_to_stockholm,#Any#Any#,685

Before Change

            for index, dictionary in enumerate(gf_feature_data):
                fh.write("//=GF RN [%s]\n" % str(index+1))
                for feature in reference_tags:
                    if feature in dictionary:
                        fh.write("//=GF %s %s\n" % (feature,
                                                   dictionary[feature]))
        else:
            fh.write("//=GF %s %s\n" % (gf_feature, gf_feature_data))

    unpadded_data = []

After Change

            for ref_num, dictionary in enumerate(gf_feature_data, start=1):
                fh.write("//=GF RN [%d]\n" % ref_num)
                for feature in dictionary:
                    if feature not in _Reference_Tags:
                        raise StockholmFormatError("Invalid reference tag %s "
                                                   "found in reference dictio"
                                                   "nary %s." % (feature,
                                                                 ref_num))
                    fh.write("//=GF %s %s\n" % (feature,
                                               dictionary[feature]))
        else:
            fh.write("//=GF %s %s\n" % (gf_feature, gf_feature_data))

Instances