54320c314f235d369ef86bc9a6f2f5acf2526275,hicexplorer/hicMergeDomains.py,,main,#Any#,382

Before Change

    if args.ctcfFile is not None:
        log.debug("ctcf: true")
        ctcfList = read_ctcf(args.ctcfFile)
        log.debug("ctcfList {}".format(ctcfList[:10]))

    mergedList = create_list_with_ctcf(args.domainFiles[0], args.minPeak, ctcfList)
    for domain in args.domainFiles[1:]:

After Change

    pValue = args.value
    listOfDomains = []
    proteinList = None
    if len(args.domainFiles) == 1 and args.proteinFile is None:
        log.error("Please use multiple or domain files or at least one domain file and one protein file.")
        raise("")
        exit(1)
    if args.proteinFile is not None:
        proteinList = read_protein(args.proteinFile)

    mergedList = create_list_with_protein(args.domainFiles[0], args.minPeak, proteinList)

Instances