4019c168d3106f6247133c9747298f6438a29384,hicexplorer/test/general/test_hicMergeLoops.py,,are_files_equal,#Any#Any#Any#Any#,12

Before Change

def are_files_equal(file1, file2, delta=1, skip=0):
    equal = True
    if delta:
        mismatches = 0
    with open(file1) as textfile1, open(file2) as textfile2:
        for i, (x, y) in enumerate(zip(textfile1, textfile2)):
            // if x.startswith("File"):
            //     continue
            if i < skip:
                continue
            if x != y:
                if delta:
                    mismatches += 1
                    if mismatches > delta:
                        equal = False
                        break
                else:
                    equal = False
                    break
    return equal


def test_loop_narrow_peak():
    outfile = NamedTemporaryFile(suffix="out", delete=True)

After Change

def are_files_equal(file1, file2, delta=1, skip=0):

    lines_file1_dict = {}
    mismatches = 0
    matches = 0
    line_count_file1 = 0
    with open(file1, "r") as textfile1:
        file_content = textfile1.readlines()

        for i, line in enumerate(file_content):
            if i < skip:
                continue
            lines_file1_dict[line] = True
            line_count_file1 += 1
    with open(file2, "r") as textfile2:

        file_content = textfile2.readlines()
        for i, line in enumerate(file_content):
            if i < skip:
                continue
            if line in lines_file1_dict:
                matches += 1
            else:
                mismatches += 1
    if mismatches < delta and line_count_file1 - delta <= matches:
        return True
    else:
        return False


def test_loop_narrow_peak():
    outfile = NamedTemporaryFile(suffix="out", delete=True)
    outfile.close()

Instances