0e6804ca93a4f76300134a126d5942114b71901c,src/pyscenic/cli/pyscenic.py,,prune_targets_command,#Any#,137

Before Change

    // https://stackoverflow.com/questions/27743711/can-i-speedup-yaml
    // The alternative for which was opted in the end is binary pickling.
    //TODO: Support loom!
    if any(args.module_fname.name.endswith(ext) for ext in FILE_EXTENSION2SEPARATOR.keys()):
        LOGGER.info("Creating modules.")
        modules = _df2modules(args)
    else:
        LOGGER.info("Loading modules.")
        //TODO: Support GMT
        modules = _load_modules(args.module_fname.name)

    if len(modules) == 0:
        LOGGER.error("Not a single module loaded")
        sys.exit(1)

After Change

    // https://stackoverflow.com/questions/27743711/can-i-speedup-yaml
    // The alternative for which was opted in the end is binary pickling.
    extension = os.path.splitext(args.module_fname.name)[1].lower()
    if extension in {".csv", ".tsv"}:
        LOGGER.info("Creating modules.")
        modules = adjacencies2modules(args.module_fname.name)
    else:
        LOGGER.info("Loading modules.")
        try:
            modules = load_modules(args.module_fname.name)
        except ValueError as e:
            LOGGER.error(e)
            sys.exit(1)

    if len(modules) == 0:
        LOGGER.error("Not a single module loaded")
        sys.exit(1)

Instances