6fb70d8a08c5b0278b02d5c82a2ad761a18063f7,anvio/structureops.py,PDBDatabase,export_pdb,#PDBDatabase#Any#Any#,1635

Before Change

    def export_pdb(self, pdb_id, output_path):
        x = self.db.get_some_rows_from_table("structures", "representative_id = "%s"" % pdb_id)
        import pdb; pdb.set_trace()


    def size_of_database(self):
        return utils.human_readable_file_size(os.path.getsize(self.db_path))

After Change

            output_path = filesnpaths.get_temp_file_path()

        as_bytes = self.db.get_some_rows_from_table_as_dict("structures", "representative_id = "%s"" % pdb_id)[pdb_id]["pdb_content"]
        with open(output_path, "wb") as f:
            f.write(as_bytes)

        return output_path


    def size_of_database(self):

Instances