82c63c208dd9cf501685585949b470891dad9bfb,pynets/utils.py,,reorient_img,#Any#Any#,742

Before Change

    else:
        print("Radiological (img)...")
        img_orig = img
        img = "{}/img.nii.gz".format(out_dir)
        shutil.copyfile(img_orig, img)
        cmd = "fslorient -getqform " + img
        qform = os.popen(cmd).read().strip("\n")
        // Posterior-Anterior Reorientation

After Change

    cmd = "fslorient -getorient " + img
    orient = os.popen(cmd).read().strip("\n")
    img_orig = img
    img = "{}/{}_pre_reor.nii.gz".format(out_dir, img.split("/")[-1].split(".nii.gz")[0])
    shutil.copyfile(img_orig, img)
    cmd = "fslorient -getqform " + img
    qform = os.popen(cmd).read().strip("\n")
    if orient == "NEUROLOGICAL":

Instances