bebea44f36d9397d273c9074079e253e0b4b8d56,workers/data_refinery_workers/processors/test_geo.py,IlluminaToPCLTestCase,test_good_detection,#IlluminaToPCLTestCase#,110

Before Change

            sample.save()

            sa = SampleAnnotation()
            sa.sample = sample
            sa.data = {}
            sa.save()

            sample_assoc = OriginalFileSampleAssociation()
            sample_assoc.original_file = og_file
            sample_assoc.sample = sample

After Change

        final_context = illumina.illumina_to_pcl(pj.pk)
        self.assertEqual(final_context["platform"], "illuminaHumanv3")

        for key in final_context["samples"][0].sampleannotation_set.all()[0].data.keys():
            self.assertTrue(key in ["detected_platform", "detection_percentage", "mapped_percentage"])

class AgilentTwoColorTestCase(TestCase):

    @tag("agilent")
    def test_agilent_twocolor(self):

Instances