e4145e615afe2540b3bd3787e013e0f6e57f68e9,scanpy/tools/dpt.py,,dpt,#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#,14

Before Change


              n_branchings=n_branchings,
              allow_kendall_tau_shift=allow_kendall_tau_shift, flavor=flavor)
    dpt.update_diffmap()
    adata.smp["X_diffmap"] = dpt.rbasis[:, 1:]
    adata.smp["X_diffmap0"] = dpt.rbasis[:, 0]
    adata.add["diffmap_evals"] = dpt.evals[1:]
    adata.add["data_graph_distance_local"] = dpt.Dsq
    adata.add["data_graph_norm_weights"] = dpt.Ktilde

After Change


              n_branchings=n_branchings,
              allow_kendall_tau_shift=allow_kendall_tau_shift, flavor=flavor)
    dpt.update_diffmap()
    adata.set_multicol_field_smp("X_diffmap", dpt.rbasis[:, 1:])
    adata.smp["X_diffmap0"] = dpt.rbasis[:, 0]
    adata.add["diffmap_evals"] = dpt.evals[1:]
    adata.add["data_graph_distance_local"] = dpt.Dsq
    adata.add["data_graph_norm_weights"] = dpt.Ktilde
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 6

Instances


Project Name: theislab/scanpy
Commit Name: e4145e615afe2540b3bd3787e013e0f6e57f68e9
Time: 2017-11-10
Author: f.alex.wolf@gmx.de
File Name: scanpy/tools/dpt.py
Class Name:
Method Name: dpt


Project Name: theislab/scanpy
Commit Name: e4145e615afe2540b3bd3787e013e0f6e57f68e9
Time: 2017-11-10
Author: f.alex.wolf@gmx.de
File Name: scanpy/data_structs/data_graph.py
Class Name:
Method Name: add_or_update_graph_in_adata


Project Name: theislab/scanpy
Commit Name: e4145e615afe2540b3bd3787e013e0f6e57f68e9
Time: 2017-11-10
Author: f.alex.wolf@gmx.de
File Name: scanpy/tools/diffmap.py
Class Name:
Method Name: diffmap