718d3e9991348f07becab87ebe2556c5e4da4ac4,prody/dynamics/adaptive.py,AdaptiveANM,runManyStepsFurthestEachWay,#AdaptiveANM#Any#,398

Before Change


            converged = self.checkConvergence()
            if converged:
                LOGGER.warn("The part starting from structB converged.")
                break

        ensemble = Ensemble("combined trajectory")
        ensemble.setAtoms(self.structA)
        for coordset in self.ensembleA.getCoordsets():

After Change


            self.resetFmin = False
            converged = self.checkConvergence()
            if converged:
                self.structA.setCoords(self.coordsA) // That way the original object is back to normal
                self.structB.setCoords(self.coordsB) // That way the original object is back to normal
                LOGGER.warn("The part starting from structB converged.")
                break
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 7

Instances


Project Name: prody/ProDy
Commit Name: 718d3e9991348f07becab87ebe2556c5e4da4ac4
Time: 2019-08-15
Author: jamesmkrieger@gmail.com
File Name: prody/dynamics/adaptive.py
Class Name: AdaptiveANM
Method Name: runManyStepsFurthestEachWay


Project Name: prody/ProDy
Commit Name: 718d3e9991348f07becab87ebe2556c5e4da4ac4
Time: 2019-08-15
Author: jamesmkrieger@gmail.com
File Name: prody/dynamics/adaptive.py
Class Name: AdaptiveANM
Method Name: runManyStepsFurthestEachWay


Project Name: prody/ProDy
Commit Name: 718d3e9991348f07becab87ebe2556c5e4da4ac4
Time: 2019-08-15
Author: jamesmkrieger@gmail.com
File Name: prody/dynamics/adaptive.py
Class Name: AdaptiveANM
Method Name: runManySteps


Project Name: prody/ProDy
Commit Name: 718d3e9991348f07becab87ebe2556c5e4da4ac4
Time: 2019-08-15
Author: jamesmkrieger@gmail.com
File Name: prody/dynamics/adaptive.py
Class Name: AdaptiveANM
Method Name: runManyStepsAlternating