fc840961c4a9f49cfcea975d01f79e5345fc521e,scanpy/tools/_dpt.py,,dpt,#Any#Any#Any#Any#Any#Any#,24

Before Change


        for count, idx in enumerate(dpt.indices): ordering_id[idx] = count
        adata.obs["dpt_order"] = ordering_id
        adata.obs["dpt_order_indices"] = dpt.indices
    logg.info("    finished", time=True, end=" " if settings.verbosity > 2 else "\n")
    logg.hint("added\n"
           + ("    \"dpt_pseudotime\", the pseudotime (adata.obs)"
              if dpt.iroot is not None else "")

After Change


        for count, idx in enumerate(dpt.indices): ordering_id[idx] = count
        adata.obs["dpt_order"] = ordering_id
        adata.obs["dpt_order_indices"] = dpt.indices
    logg.info("    finished", time=True, end=" " if _settings_verbosity_greater_or_equal_than(3) else "\n")
    logg.hint("added\n"
           + ("    \"dpt_pseudotime\", the pseudotime (adata.obs)"
              if dpt.iroot is not None else "")
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 7

Non-data size: 6

Instances


Project Name: theislab/scanpy
Commit Name: fc840961c4a9f49cfcea975d01f79e5345fc521e
Time: 2019-02-12
Author: flying-sheep@web.de
File Name: scanpy/tools/_dpt.py
Class Name:
Method Name: dpt


Project Name: theislab/scanpy
Commit Name: fc840961c4a9f49cfcea975d01f79e5345fc521e
Time: 2019-02-12
Author: flying-sheep@web.de
File Name: scanpy/tools/_score_genes.py
Class Name:
Method Name: score_genes


Project Name: theislab/scanpy
Commit Name: fc840961c4a9f49cfcea975d01f79e5345fc521e
Time: 2019-02-12
Author: flying-sheep@web.de
File Name: scanpy/tools/_louvain.py
Class Name:
Method Name: louvain


Project Name: theislab/scanpy
Commit Name: fc840961c4a9f49cfcea975d01f79e5345fc521e
Time: 2019-02-12
Author: flying-sheep@web.de
File Name: scanpy/tools/_dpt.py
Class Name:
Method Name: _diffmap


Project Name: theislab/scanpy
Commit Name: fc840961c4a9f49cfcea975d01f79e5345fc521e
Time: 2019-02-12
Author: flying-sheep@web.de
File Name: scanpy/tools/_leiden.py
Class Name:
Method Name: leiden


Project Name: theislab/scanpy
Commit Name: fc840961c4a9f49cfcea975d01f79e5345fc521e
Time: 2019-02-12
Author: flying-sheep@web.de
File Name: scanpy/tools/_draw_graph.py
Class Name:
Method Name: draw_graph


Project Name: theislab/scanpy
Commit Name: fc840961c4a9f49cfcea975d01f79e5345fc521e
Time: 2019-02-12
Author: flying-sheep@web.de
File Name: scanpy/neighbors/__init__.py
Class Name:
Method Name: neighbors