73ec9752604a0a0210fafa0722ca355629648502,nucleus/io/fasta.py,InMemoryRefReader,__str__,#InMemoryRefReader#,183

Before Change

  def __str__(self):
    contigs_strs = [
        "Contig(chrom={} start={}, end={}, bases={})".format(
            chrom, start, end, bases
            if len(bases) < 50 else bases[0:50] + "...")
        for chrom, (start, end, bases) in self._chroms.iteritems()
    ]
    return "InMemoryRefReader(contigs={})".format("".join(contigs_strs))

After Change

          refseq.region.reference_name, refseq.region.start, refseq.region.end,
          bases)

    contigs_strs = [
        _format_refseq(refseq)
        for refseq in self._reader.reference_sequences.itervalues()
    ]
    return "InMemoryRefReader(contigs={})".format("".join(contigs_strs))

  __repr__ = __str__

Instances