def fbase(fname):
Strip directory and all extensions from a filename.
return os.path.basename(fname).split(".", 1)[0]
def rbase(fname):
Strip directory and final extension from a filename.
After Change
def fbase(fname):
Strip directory and all extensions from a filename.
base = os.path.basename(fname)
// Gzip extension usually follows another extension
if base.endswith(".gz"):
base = base[:-3]
// Cases to drop more than just the last dot
known_multipart_exts = (
".antitargetcoverage.cnn", ".targetcoverage.cnn",
// Pipeline suffixes
".recal.bam", ".deduplicated.realign.bam",
)
for ext in known_multipart_exts:
if base.endswith(ext):
base = base[:-len(ext)]
break
else:
base = base.rsplit(".", 1)[0]
return base
