f255050ac8b81b4b822510cdc5a1ddcc2b4167d9,skbio/sequence/_sequence.py,RNA,degenerate_map,#Any#,1838
Before Change
"H": set("ACU"), "V": set("ACG"), "N": set("ACGU")
}
for degen_char in list(degen_map.keys()):
nondegen_chars = degen_map[degen_char]
degen_map[degen_char.lower()] = set(
"".join(nondegen_chars).lower())
return degen_map
After Change
non-degenerate IUPAC RNA characters it represents.
return {
"R": set("AG"), "Y": set("CU"), "M": set("AC"), "K": set("UG"),
"W": set("AU"), "S": set("GC"), "B": set("CGU"), "D": set("AGU"),
"H": set("ACU"), "V": set("ACG"), "N": set("ACGU")
}
In pattern: SUPERPATTERN
Frequency: 4
Non-data size: 7
Instances
Project Name: biocore/scikit-bio
Commit Name: f255050ac8b81b4b822510cdc5a1ddcc2b4167d9
Time: 2015-03-20
Author: jai.rideout@gmail.com
File Name: skbio/sequence/_sequence.py
Class Name: RNA
Method Name: degenerate_map
Project Name: lufficc/SSD
Commit Name: 685250f5ee3ba20f6dd796a6730c9e8a0b450064
Time: 2019-06-25
Author: luffy.lcc@gmail.com
File Name: ssd/structures/container.py
Class Name: Container
Method Name: to
Project Name: lufficc/SSD
Commit Name: 685250f5ee3ba20f6dd796a6730c9e8a0b450064
Time: 2019-06-25
Author: luffy.lcc@gmail.com
File Name: ssd/structures/container.py
Class Name: Container
Method Name: numpy
Project Name: biocore/scikit-bio
Commit Name: f255050ac8b81b4b822510cdc5a1ddcc2b4167d9
Time: 2015-03-20
Author: jai.rideout@gmail.com
File Name: skbio/sequence/_sequence.py
Class Name: DNA
Method Name: degenerate_map