a25f35714b66effc0764add4db72179f0da6d408,testing/grid_sampler_test.py,UniformSamplerTest,test_2d,#UniformSamplerTest#,71

Before Change

                              modality_names=("FLAIR", "T1"),
                              allow_missing=True)

        hist_norm = HistNorm(
            models_filename="./testing_data/standardisation_models.txt",
            binary_masking_func=BinaryMaskingLayer(
                type="otsu_plus",
                multimod_fusion="or"),
            norm_type="percentile",
            cutoff=(0.01, 0.99))

        volume_loader = VolumeLoaderLayer(csv_loader,
                                          hist_norm,
                                          is_training=False)

After Change

                              modality_names=("FLAIR", "T1"),
                              allow_missing=True)

        masking_func = BinaryMaskingLayer(
            type="otsu_plus",
            multimod_fusion="or")
        hist_norm = HistNorm(
            models_filename="./testing_data/standardisation_models.txt",
            binary_masking_func=masking_func,
            norm_type="percentile",
            cutoff=(0.01, 0.99))
        mv_norm = MVNorm(binary_masking_func=masking_func)

        volume_loader = VolumeLoaderLayer(csv_loader,
                                          (hist_norm, mv_norm),
                                          is_training=False)
        print("found {} subjects".format(len(volume_loader.subject_list)))

Instances