29db4abdbeb839340ac5b0caf934ebda93892934,cnvlib/commands.py,,,#,1035

Before Change

P_metrics = AP_subparsers.add_parser("metrics", help=_cmd_metrics.__doc__)
P_metrics.add_argument("cnarrays", nargs="+",
        help=One or more bin-level coverage data files (*.cnn, *.cnr).)
P_metrics.add_argument("-s", "--segments", nargs="+",
        help=One or more segmentation data files (*.cns, output of the
                "segment" command).  If more than one file is given, the number
                must match the coverage data files, in which case the input
                files will be paired together in the given order. Otherwise, the
                same segments will be used for all coverage files.)
P_metrics.add_argument("--drop-low-coverage", action="store_true",
        help=Drop very-low-coverage bins before calculations to reduce
                negative "fat tail" of bin log2 values in poor-quality
                tumor samples.)

After Change

// Shims
AP_subparsers._name_parser_map["gender"] = P_sex
do_gender = public(do_sex)


// metrics ---------------------------------------------------------------------

Instances