4a432c5225262f26517776aa865c4c8428d808ad,pynets/plotting/plot_graphs.py,,plot_conn_mat,#Any#Any#Any#Any#Any#Any#,17

Before Change

        print("Connectivity matrix too sparse for plotting...")

    if len(labels) > 150:
        tick_interval = int(np.around(len(labels)/50))
    else:
        tick_interval = int(np.around(len(labels)))
    plt.axes().yaxis.set_major_locator(mticker.MultipleLocator(tick_interval))
    plt.axes().xaxis.set_major_locator(mticker.MultipleLocator(tick_interval))

After Change

    conn_matrix_bin = thresholding.binarize(conn_matrix)
    conn_matrix_plt = np.nan_to_num(np.multiply(conn_matrix, conn_matrix_bin))

    with open(
        pkg_resources.resource_filename("pynets", "runconfig.yaml"), "r"
    ) as stream:
        hardcoded_params = yaml.load(stream)
        try:
            labeling_atlas = hardcoded_params["plotting"]["labeling_atlas"][0]
        except KeyError:
            print(
                "ERROR: Plotting configuration not successfully extracted from"
                " runconfig.yaml"
            )
            sys.exit(0)
    stream.close()

    labels = [i[0][labeling_atlas] for i in labels]

Instances