ec4d077c5bd7e7d413c003ef5ed39cf4ced1f0f5,anvio/taxoestimation.py,SCGsTaxomy,estimate_taxonomy,#SCGsTaxomy#Any#,448

Before Change

                self.run.info("Bin name",
                              name, nl_before=1)
                self.run.info("estimate taxonomy",
                              "/".join(list(taxonomy.values())))


                entries_db+=[(tuple([entry_id,self.collection_name,name,source]+list(taxonomy.values())))]
                entry_id+=1

After Change

        with open(self.output_file_path,"w") as output:
            output_taxonomy=["\t".join(line) for line in possibles_taxonomy]
            output.write("\n".join(output_taxonomy))

        if anvio.DEBUG:
            self.show_taxonomy_estimation(possibles_taxonomy)

Instances